Sopen01g039790


Description : AUX/IAA family


Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g039790
Cluster HCCA clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
Bradi1g33160 No alias auxin response factor 16 0.02 Orthogroups_2024-Update
Bradi5g15904 No alias auxin response factor 10 0.03 Orthogroups_2024-Update
Bradi5g25157 No alias Transcriptional factor B3 family protein /... 0.03 Orthogroups_2024-Update
Glyma.03G070500 No alias auxin response factor 9 0.03 Orthogroups_2024-Update
Glyma.08G027800 No alias Transcriptional factor B3 family protein /... 0.03 Orthogroups_2024-Update
Glyma.13G140600 No alias auxin response factor 16 0.03 Orthogroups_2024-Update
Glyma.13G221400 No alias auxin response factor 8 0.02 Orthogroups_2024-Update
Glyma.19G181900 No alias auxin response factor 16 0.04 Orthogroups_2024-Update
LOC_Os06g09660 No alias auxin response factor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g32110 No alias auxin response factor, putative, expressed 0.02 Orthogroups_2024-Update
Potri.002G055000 No alias auxin response factor 8 0.02 Orthogroups_2024-Update
Potri.002G207050 No alias auxin response factor 2 0.02 Orthogroups_2024-Update
Seita.1G077200.1 No alias ARF-type transcription factor 0.03 Orthogroups_2024-Update
Seita.5G438100.1 No alias ARF-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.010G253300.1 No alias ARF-type transcription factor & auxin signal mediator... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
BP GO:0009725 response to hormone IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010525 Auxin_resp 237 316
IPR003340 B3_DNA-bd 111 211
IPR033389 AUX/IAA_dom 551 660
No external refs found!