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  5. Sopen01g040170

Sopen01g040170


Description : PPR repeat


Gene families : OG_42_0009164 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009164_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g040170
Cluster HCCA clusters: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
Glyma.06G154600 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
MA_119635g0010 No alias (at2g22070 : 548.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00032670-RA No alias (at4g37170 : 525.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Seita.1G193000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G176500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc01g096440 No alias Pentatricopeptide repeat superfamily protein, putative... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 350 398
IPR002885 Pentatricopeptide_repeat 246 294
IPR002885 Pentatricopeptide_repeat 187 214
IPR002885 Pentatricopeptide_repeat 114 138
IPR002885 Pentatricopeptide_repeat 323 347
IPR002885 Pentatricopeptide_repeat 81 108
No external refs found!