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  5. Sopen01g040810

Sopen01g040810


Description : PPR repeat family


Gene families : OG_42_0000934 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000934_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g040810
Cluster HCCA clusters: Cluster_302

Target Alias Description ECC score Gene Family Method Actions
Bradi2g13480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g28390 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G160887 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.10G264500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G039300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os01g32090 No alias PPR repeat domain containing protein, putative, expressed 0.04 Orthogroups_2024-Update
MA_499258g0010 No alias (at1g71060 : 380.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_65477g0010 No alias (at3g62470 : 535.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_881199g0010 No alias (at1g77360 : 416.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00021412-RA No alias (at3g62470 : 474.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Potri.010G114700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 424 473
IPR002885 Pentatricopeptide_repeat 584 631
IPR002885 Pentatricopeptide_repeat 360 384
IPR002885 Pentatricopeptide_repeat 658 686
IPR002885 Pentatricopeptide_repeat 290 319
IPR002885 Pentatricopeptide_repeat 553 582
IPR002885 Pentatricopeptide_repeat 388 417
IPR002885 Pentatricopeptide_repeat 510 542
No external refs found!