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  5. Sopen01g041230

Sopen01g041230


Description : tRNA pseudouridine synthase D (TruD)


Gene families : OG_42_0003821 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003821_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g041230
Cluster HCCA clusters: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
At3g04820 No alias Pseudouridine synthase family protein... 0.02 Orthogroups_2024-Update
Bradi2g20360 No alias Pseudouridine synthase family protein 0.05 Orthogroups_2024-Update
Glyma.19G243400 No alias Pseudouridine synthase family protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G078030.47 No alias TruD-type tRNA pseudouridine synthase 0.02 Orthogroups_2024-Update
Sobic.002G386900.7 No alias TruD-type tRNA pseudouridine synthase 0.03 Orthogroups_2024-Update
Sobic.009G191500.1 No alias TruD-type tRNA pseudouridine synthase 0.03 Orthogroups_2024-Update
Solyc01g097590 No alias No description available 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
BP GO:0009451 RNA modification IEA InterProScan predictions
MF GO:0009982 pseudouridine synthase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001656 PsdUridine_synth_TruD 187 340
No external refs found!