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  5. Sopen01g041720

Sopen01g041720


Description : PPR repeat family


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g041720
Cluster HCCA clusters: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
81625 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
84339 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
92008 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
A4A49_22283 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
AC203841.3_FG002 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
At2g17210 No alias Pentatricopeptide repeat-containing protein At2g17210... 0.02 Orthogroups_2024-Update
At2g34400 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.02 Orthogroups_2024-Update
At3g14330 No alias Pentatricopeptide repeat-containing protein At3g14330... 0.03 Orthogroups_2024-Update
At3g23330 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
At3g25970 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
At4g14170 No alias Pentatricopeptide repeat-containing protein At4g14170... 0.02 Orthogroups_2024-Update
At5g66520 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.02 Orthogroups_2024-Update
Bradi1g38705 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g41651 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Bradi4g30190 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
Bradi5g12970 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi5g13537 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.A03196.1 No alias RNA editing factor *(CREF3) 0.03 Orthogroups_2024-Update
Brara.E01323.1 No alias RNA editing factor *(OTP81) 0.02 Orthogroups_2024-Update
Brara.J02104.1 No alias RNA editing factor *(RARE1) 0.02 Orthogroups_2024-Update
Brara.K00505.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G138303 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G170896 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G456114 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G462417 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G173200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G234100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G043900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G127500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G008800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G068800 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G086500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.08G252400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.09G286300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G102800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.12G239300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G220450 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.14G224400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G193700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G209700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.16G221300 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G072100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G155800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU0Hr1G015970.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G053030.5 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G085770.2 No alias RNA editing factor *(CRR2) 0.03 Orthogroups_2024-Update
LOC_Os02g46980 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g38310 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g06650 No alias tetratricopeptide-like helical, putative, expressed 0.02 Orthogroups_2024-Update
MA_10429371g0010 No alias (at3g57430 : 716.0) Encodes a chloroplast RNA editing... 0.02 Orthogroups_2024-Update
MA_122546g0010 No alias (at3g13770 : 499.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_27147g0010 No alias (at3g49170 : 606.0) embryo defective 2261 (EMB2261);... 0.02 Orthogroups_2024-Update
MA_9526611g0020 No alias (at3g57430 : 726.0) Encodes a chloroplast RNA editing... 0.02 Orthogroups_2024-Update
PSME_00002640-RA No alias (at4g13650 : 724.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00003163-RA No alias (at3g23330 : 192.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00011618-RA No alias (at3g57430 : 608.0) Encodes a chloroplast RNA editing... 0.02 Orthogroups_2024-Update
PSME_00014882-RA No alias (at4g13650 : 307.0) Pentatricopeptide repeat (PPR)... 0.01 Orthogroups_2024-Update
PSME_00015055-RA No alias (at1g11290 : 619.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00024868-RA No alias (at1g11290 : 684.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00044695-RA No alias (at2g22070 : 545.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00047081-RA No alias (at1g18485 : 652.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00057058-RA No alias (at3g12770 : 592.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00057248-RA No alias (at1g11290 : 733.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
Potri.010G086200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G058900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.014G029500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.015G047600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.017G091600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.018G092400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G191400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.1G334200.1 No alias RNA editing factor *(CLB19) 0.02 Orthogroups_2024-Update
Seita.2G001800.1 No alias RNA editing factor *(ELI1) 0.03 Orthogroups_2024-Update
Seita.2G047600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G126600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.4G168200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.7G086300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G057100.1 No alias RNA editing factor *(OTP85) 0.04 Orthogroups_2024-Update
Sobic.001G513000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G385200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G246800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.006G146900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.008G047100.1 No alias RNA editing factor *(REME2/PGL1) 0.03 Orthogroups_2024-Update
Sobic.010G189200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g007850 No alias Pentatricopeptide repeat superfamily protein, putative... 0.04 Orthogroups_2024-Update
Solyc01g097670 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc01g112200 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc02g065030 No alias No description available 0.03 Orthogroups_2024-Update
Solyc02g079380 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc03g114660 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc04g063270 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc05g006800 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Solyc06g066080 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc09g065710 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc10g007940 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc10g054730 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc12g096680 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen11g002630 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 379 425
IPR002885 Pentatricopeptide_repeat 144 191
IPR002885 Pentatricopeptide_repeat 119 142
IPR002885 Pentatricopeptide_repeat 454 476
IPR002885 Pentatricopeptide_repeat 322 347
IPR002885 Pentatricopeptide_repeat 558 582
IPR002885 Pentatricopeptide_repeat 219 246
IPR002885 Pentatricopeptide_repeat 586 616
IPR002885 Pentatricopeptide_repeat 486 506
IPR002885 Pentatricopeptide_repeat 248 278
IPR032867 DYW_dom 759 882
No external refs found!