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  5. Sopen01g042040

Sopen01g042040


Description : PPR repeat family


Gene families : OG_42_0004020 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004020_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g042040
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
At1g09190 No alias Pentatricopeptide repeat-containing protein At1g09190... 0.03 Orthogroups_2024-Update
Brara.D01246.1 No alias Unknown function 0.03 Orthogroups_2024-Update
PSME_00050135-RA No alias (at2g13600 : 432.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Potri.002G072500 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
Potri.010G020500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Seita.2G278000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g098480 No alias Pentatricopeptide repeat-containing protein, putative... 0.05 Orthogroups_2024-Update
Solyc09g075170 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 359 380
IPR002885 Pentatricopeptide_repeat 228 254
IPR002885 Pentatricopeptide_repeat 96 122
IPR002885 Pentatricopeptide_repeat 387 434
IPR002885 Pentatricopeptide_repeat 152 201
IPR002885 Pentatricopeptide_repeat 284 332
No external refs found!