Sopen01g042770

Description : DNA polymerase family B

Gene families : OG_42_0001655 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001655_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen01g042770
Cluster	HCCA clusters: Cluster_365

Target	Alias	Description	ECC score	Gene Family Method
HORVU2Hr1G020260.2	No alias	catalytic component *(REV3) of DNA polymerase zeta complex	0.03	Orthogroups_2024-Update
LOC_Os07g47280	No alias	DNA polymerase zeta catalytic subunit, putative, expressed	0.02	Orthogroups_2024-Update
Seita.8G062200.1	No alias	component *(POLD1) of DNA polymerase delta complex &...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR006134	DNA-dir_DNA_pol_B_multi_dom	1382	1829
IPR006133	DNA-dir_DNA_pol_B_exonuc	56	226
IPR006133	DNA-dir_DNA_pol_B_exonuc	1116	1315
IPR025687	Znf-C4pol	1875	1948

External Links

No external refs found!