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  5. Sopen01g043800

Sopen01g043800


Description : Helicase conserved C-terminal domain


Gene families : OG_42_0000769 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000769_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g043800
Cluster HCCA clusters: Cluster_315

Target Alias Description ECC score Gene Family Method Actions
Brara.H02738.1 No alias helicase component *(RecQ4A) of RTR Holliday junction... 0.02 Orthogroups_2024-Update
LOC_Os02g54020 No alias DEAD-box ATP-dependent RNA helicase, putative, expressed 0.03 Orthogroups_2024-Update
Solyc01g100280 No alias RNA helicase DEAH-box4 0.03 Orthogroups_2024-Update
Solyc01g103960 No alias RNA helicase DEAH-box15 0.05 Orthogroups_2024-Update
evm.model.tig00020961.28 No alias (at4g35740 : 303.0) Encodes RECQ3, an ATP-dependent... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 253 421
IPR001650 Helicase_C 460 566
IPR032284 RecQ_Zn-bd 579 648
No external refs found!