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  5. Sopen01g043860

Sopen01g043860


Description : PPR repeat family


Gene families : OG_42_0004020 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004020_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g043860
Cluster HCCA clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Brara.E00798.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.E02064.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.12G030500 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Potri.002G072500 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Seita.2G278000.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 165 214
IPR002885 Pentatricopeptide_repeat 399 446
IPR002885 Pentatricopeptide_repeat 298 344
IPR002885 Pentatricopeptide_repeat 270 297
IPR002885 Pentatricopeptide_repeat 474 499
IPR002885 Pentatricopeptide_repeat 246 267
No external refs found!