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  5. Sopen01g044300

Sopen01g044300


Description : PPR repeat family


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g044300
Cluster HCCA clusters: Cluster_402

Target Alias Description ECC score Gene Family Method Actions
Bradi1g69800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
PSME_00018501-RA No alias (at3g46790 : 252.0) Encodes a member of a PCMP (plant... 0.03 Orthogroups_2024-Update
PSME_00035450-RA No alias (at4g33990 : 517.0) embryo defective 2758 (EMB2758);... 0.03 Orthogroups_2024-Update
Seita.3G006500.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 376 424
IPR002885 Pentatricopeptide_repeat 73 120
IPR002885 Pentatricopeptide_repeat 178 207
IPR002885 Pentatricopeptide_repeat 452 475
IPR002885 Pentatricopeptide_repeat 250 277
No external refs found!