1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g109120

Solyc01g109120


Description : Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** AT3G18950.1)


Gene families : OG_42_0000343 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000343_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g109120
Cluster HCCA clusters: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
A4A49_07643 No alias compass-like h3k4 histone methylase component wdr5a 0.03 Orthogroups_2024-Update
A4A49_28422 No alias compass-like h3k4 histone methylase component wdr5a 0.04 Orthogroups_2024-Update
A4A49_30080 No alias zinc finger ccch domain-containing protein 62 0.03 Orthogroups_2024-Update
At1g24530 No alias F21J9.19 [Source:UniProtKB/TrEMBL;Acc:Q9FYL1] 0.05 Orthogroups_2024-Update
At2g26490 No alias Protein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716] 0.03 Orthogroups_2024-Update
Brara.C02527.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.C04314.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I03394.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.K00352.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G022627 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G368126 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G017700 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G126000 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os03g52870 No alias WD-40 repeat family protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_137730g0010 No alias (at1g49450 : 217.0) Transducin/WD40 repeat-like... 0.02 Orthogroups_2024-Update
Potri.009G109500 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Solyc07g025140 No alias Transducin/WD40 repeat-like superfamily protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen04g033250 No alias WD domain, G-beta repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0004806 triglyceride lipase activity IEP Predicted GO
BP GO:0006163 purine nucleotide metabolic process IEP Predicted GO
BP GO:0006753 nucleoside phosphate metabolic process IEP Predicted GO
BP GO:0009117 nucleotide metabolic process IEP Predicted GO
BP GO:0009123 nucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009141 nucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009150 purine ribonucleotide metabolic process IEP Predicted GO
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009259 ribonucleotide metabolic process IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
BP GO:0019693 ribose phosphate metabolic process IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
BP GO:0046034 ATP metabolic process IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predicted GO
BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 119 145
IPR001680 WD40_repeat 396 452
IPR001680 WD40_repeat 262 297
IPR001680 WD40_repeat 228 256
IPR001680 WD40_repeat 357 387
IPR001680 WD40_repeat 146 183
No external refs found!