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  5. Sopen01g046140

Sopen01g046140


Description : BOP1NT (NUC169) domain


Gene families : OG_42_0004523 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g046140
Cluster HCCA clusters: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
At2g40360 No alias Ribosome biogenesis protein BOP1 homolog... 0.02 Orthogroups_2024-Update
Bradi3g39580 No alias Transducin/WD40 repeat-like superfamily protein 0.09 Orthogroups_2024-Update
Bradi3g60762 No alias Transducin/WD40 repeat-like superfamily protein 0.08 Orthogroups_2024-Update
Brara.C02279.1 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.09 Orthogroups_2024-Update
Cre10.g417950 No alias Transducin/WD40 repeat-like superfamily protein 0.09 Orthogroups_2024-Update
Glyma.12G167800 No alias Transducin/WD40 repeat-like superfamily protein 0.07 Orthogroups_2024-Update
Kfl00363_0120 kfl00363_0120_v1.1 (at2g40360 : 713.0) Transducin/WD40 repeat-like... 0.05 Orthogroups_2024-Update
MA_10426057g0010 No alias (at2g40360 : 750.0) Transducin/WD40 repeat-like... 0.02 Orthogroups_2024-Update
Mp2g26050.1 No alias component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.04 Orthogroups_2024-Update
Pp1s3_332V6 No alias block of proliferation 1 0.03 Orthogroups_2024-Update
Seita.6G140100.1 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.1 Orthogroups_2024-Update
Sobic.003G156500.1 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.12 Orthogroups_2024-Update
Solyc01g103740 No alias No description available 0.1 Orthogroups_2024-Update
evm.model.contig_4408.23 No alias (at2g40360 : 214.0) Transducin/WD40 repeat-like... 0.08 Orthogroups_2024-Update
evm.model.tig00000382.38 No alias (at2g40360 : 570.0) Transducin/WD40 repeat-like... 0.1 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006364 rRNA processing IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012953 BOP1_N_dom 158 413
IPR001680 WD40_repeat 416 451
No external refs found!