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  5. Sopen01g046240

Sopen01g046240


Description : COBRA-like protein


Gene families : OG_42_0000486 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000486_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g046240
Cluster HCCA clusters: Cluster_388

Target Alias Description ECC score Gene Family Method Actions
Brara.B03390.1 No alias regulatory protein *(COB) of cellulose-hemicellulose... 0.02 Orthogroups_2024-Update
Glyma.04G006100 No alias COBRA-like protein 2 precursor 0.02 Orthogroups_2024-Update
Glyma.06G005800 No alias COBRA-like protein 1 precursor 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
BP GO:0010215 cellulose microfibril organization IEA InterProScan predictions
BP GO:0016049 cell growth IEA InterProScan predictions
CC GO:0031225 anchored component of membrane IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 382 426
IPR006918 COBRA_pln 48 208
No external refs found!