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  5. Solyc01g109280

Solyc01g109280


Description : RING/U-box superfamily protein (AHRD V3.3 *** AT2G16090.4)


Gene families : OG_42_0000347 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000347_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g109280
Cluster HCCA clusters: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
A4A49_14246 No alias putative e3 ubiquitin-protein ligase ari8 0.03 Orthogroups_2024-Update
Brara.B00422.1 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Glyma.11G129000 No alias IBR domain-containing protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G055260.4 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Potri.007G126900 No alias IBR domain-containing protein 0.03 Orthogroups_2024-Update
Potri.017G032000 No alias IBR domain-containing protein 0.02 Orthogroups_2024-Update
Pp1s6_282V6 No alias protein ariadne- 0.02 Orthogroups_2024-Update
Seita.7G148700.1 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.9G483400.1 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.007G185900.1 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006470 protein dephosphorylation IEP Predicted GO
BP GO:0006865 amino acid transport IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009314 response to radiation IEP Predicted GO
BP GO:0009416 response to light stimulus IEP Predicted GO
BP GO:0009581 detection of external stimulus IEP Predicted GO
BP GO:0009582 detection of abiotic stimulus IEP Predicted GO
BP GO:0009583 detection of light stimulus IEP Predicted GO
BP GO:0009584 detection of visible light IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
BP GO:0018298 protein-chromophore linkage IEP Predicted GO
BP GO:0051606 detection of stimulus IEP Predicted GO
BP GO:0098656 anion transmembrane transport IEP Predicted GO
BP GO:1903825 organic acid transmembrane transport IEP Predicted GO
BP GO:1905039 carboxylic acid transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002867 IBR_dom 270 310
IPR002867 IBR_dom 191 253
No external refs found!