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  5. Sopen01g049040

Sopen01g049040


Description : SRF-type transcription factor (DNA-binding and dimerisation domain)


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g049040

Target Alias Description ECC score Gene Family Method Actions
Bradi2g43290 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Brara.E00310.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.05G163200 No alias K-box region and MADS-box transcription factor family protein 0.05 Orthogroups_2024-Update
Glyma.13G257000 No alias K-box region and MADS-box transcription factor family protein 0.04 Orthogroups_2024-Update
Kfl00560_0030 kfl00560_0030_v1.... (q40872|ag_pangi : 148.0) Floral homeotic protein... 0.03 Orthogroups_2024-Update
PSME_00013164-RA No alias (at4g11880 : 108.0) AGL12, AGL14, and AGL17 are all... 0.03 Orthogroups_2024-Update
PSME_00017701-RA No alias (at4g16370 : 263.0) Encodes an oligopeptide transporter... 0.02 Orthogroups_2024-Update
PSME_00053030-RA No alias (q6q9i1|mads7_orysa : 100.0) MADS-box transcription... 0.02 Orthogroups_2024-Update
Potri.004G115500 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Potri.005G182200 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Potri.017G047300 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Seita.5G432700.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Sopen01g037770 No alias K-box region 0.03 Orthogroups_2024-Update
Sopen12g029050 No alias SRF-type transcription factor (DNA-binding and... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 4 50
No external refs found!