Sopen01g050410

Description : DYW family of nucleic acid deaminases

Gene families : OG_42_0002868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002868_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen01g050410
Cluster	HCCA clusters: Cluster_233

Target	Alias	Description	ECC score	Gene Family Method	Actions
Solyc01g108180	No alias	Pentatricopeptide repeat-containing protein (AHRD V3.3...	0.03	Orthogroups_2024-Update
Solyc05g007740	No alias	Pentatricopeptide repeat-containing protein (AHRD V3.3...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	332	358
IPR002885	Pentatricopeptide_repeat	361	389
IPR032867	DYW_dom	535	626

External Links

No external refs found!