Sopen01g051850


Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g051850
Cluster HCCA clusters: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
A4A49_03158 No alias glycine-rich rna-binding protein 4, mitochondrial 0.04 Orthogroups_2024-Update
A4A49_27149 No alias glycine-rich rna-binding protein 6, mitochondrial 0.04 Orthogroups_2024-Update
A4A49_28034 No alias glycine-rich rna-binding protein rz1a 0.02 Orthogroups_2024-Update
At2g21660 No alias Glycine-rich RNA-binding protein 7... 0.03 Orthogroups_2024-Update
At4g39260 No alias Glycine-rich RNA-binding protein 8... 0.03 Orthogroups_2024-Update
Bradi1g02570 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 Orthogroups_2024-Update
Bradi2g58690 No alias glycine-rich RNA-binding protein 4 0.02 Orthogroups_2024-Update
Bradi4g00940 No alias cold, circadian rhythm, and RNA binding 1 0.02 Orthogroups_2024-Update
Brara.C01346.1 No alias RNA editing factor *(ORRM2) 0.03 Orthogroups_2024-Update
Brara.E00758.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.K01454.1 No alias Unknown function 0.04 Orthogroups_2024-Update
GRMZM2G009448 No alias glycine-rich RNA-binding protein 3 0.02 Orthogroups_2024-Update
GRMZM2G042118 No alias glycine-rich RNA-binding protein 2 0.03 Orthogroups_2024-Update
GRMZM2G113513 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Glyma.04G012700 No alias cold, circadian rhythm, and rna binding 2 0.03 Orthogroups_2024-Update
Glyma.05G020900 No alias glycine-rich RNA-binding protein 3 0.04 Orthogroups_2024-Update
HORVU3Hr1G092880.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os10g17454 No alias RNA recognition motif containing protein, expressed 0.03 Orthogroups_2024-Update
MA_526835g0010 No alias (at5g61030 : 112.0) encodes a glycine-rich RNA binding... 0.03 Orthogroups_2024-Update
Mp1g18780.1 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Orthogroups_2024-Update
Mp4g15980.1 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Orthogroups_2024-Update
PSME_00004460-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Potri.001G236300 No alias glycine-rich RNA-binding protein 4 0.03 Orthogroups_2024-Update
Potri.004G155300 No alias cold, circadian rhythm, and RNA binding 1 0.04 Orthogroups_2024-Update
Potri.008G033000 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 Orthogroups_2024-Update
Potri.009G116400 No alias cold, circadian rhythm, and RNA binding 1 0.03 Orthogroups_2024-Update
Potri.012G061600 No alias glycine-rich RNA-binding protein 3 0.02 Orthogroups_2024-Update
Potri.017G059000 No alias glycine-rich RNA-binding protein 2 0.03 Orthogroups_2024-Update
Seita.2G062600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G427300.1 No alias RNA editing factor *(ORRM3) 0.02 Orthogroups_2024-Update
Seita.9G144200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G141300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g109660 No alias meloidogyne-induced giant cell protein DB275 0.07 Orthogroups_2024-Update
Solyc09g092320 No alias RNA binding protein (AHRD V3.3 *** O23793_NICSY) 0.02 Orthogroups_2024-Update
Solyc10g051380 No alias Glycine-rich RNA-binding protein (AHRD V3.3 *** GRP1_DAUCA) 0.03 Orthogroups_2024-Update
Solyc10g051390 No alias RNA-binding glycine-rich protein (AHRD V3.3 *** D6PZY6_TOBAC) 0.13 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 9 77
No external refs found!