Sopen01g052250

Description : gag-polypeptide of LTR copia-type

Gene families : OG_42_0000330 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000330_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen01g052250
Cluster	HCCA clusters: Cluster_126

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bradi4g45200	No alias	zinc finger (C3HC4-type RING finger) family protein	0.03	Orthogroups_2024-Update
Seita.2G215600.1	No alias	plant-specific E3 ubiquitin ligase *(RSL/RFA)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	605	621
IPR002867	IBR_dom	148	196
IPR002867	IBR_dom	280	316
IPR002867	IBR_dom	215	261
IPR002867	IBR_dom	83	129

External Links

No external refs found!