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  5. Sopen01g053030

Sopen01g053030


Description : Oligonucleotide/oligosaccharide-binding (OB)-fold


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g053030
Cluster HCCA clusters: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
414740 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
429199 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
At1g32490 No alias ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5] 0.04 Orthogroups_2024-Update
At3g26560 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Orthogroups_2024-Update
Bradi1g61220 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Bradi1g64190 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Bradi4g19990 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Brara.B03286.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.H02028.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Cre07.g349100 No alias RNA helicase family protein 0.04 Orthogroups_2024-Update
Cre24.g755347 No alias RNA helicase family protein 0.04 Orthogroups_2024-Update
GRMZM2G480809 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Glyma.01G142700 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Glyma.13G342400 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Glyma.15G031900 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Kfl00085_0100 kfl00085_0100_v1.1 (at1g32490 : 1214.0) Encodes a homolog of the yeast PRP2... 0.02 Orthogroups_2024-Update
LOC_Os08g24760 No alias ATP-dependent RNA helicase, putative, expressed 0.03 Orthogroups_2024-Update
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Orthogroups_2024-Update
Mp7g03460.1 No alias RNA helicase (Prp16) 0.02 Orthogroups_2024-Update
PSME_00016394-RA No alias (at3g26560 : 1512.0) ATP-dependent RNA helicase,... 0.02 Orthogroups_2024-Update
Seita.3G152600.1 No alias RNA helicase *(Prp2) 0.02 Orthogroups_2024-Update
Sobic.002G313400.1 No alias RNA helicase *(Prp16) 0.03 Orthogroups_2024-Update
Sobic.004G174200.1 No alias RNA helicase *(Prp2) 0.03 Orthogroups_2024-Update
Solyc01g079250 No alias RNA helicase DEAH-box2 0.05 Orthogroups_2024-Update
evm.model.contig_450.3 No alias (at3g62310 : 264.0) RNA helicase family protein;... 0.02 Orthogroups_2024-Update
evm.model.tig00022075.25 No alias (at3g62310 : 1059.0) RNA helicase family protein;... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003029 S1_domain 221 288
IPR011709 DUF1605 1060 1135
IPR007502 Helicase-assoc_dom 914 1002
IPR001650 Helicase_C 724 852
IPR011545 DEAD/DEAH_box_helicase_dom 529 678
No external refs found!