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  5. Sopen01g053090

Sopen01g053090


Description : WD domain, G-beta repeat


Gene families : OG_42_0004261 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004261_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g053090
Cluster HCCA clusters: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
At5g15550 No alias Ribosome biogenesis protein WDR12 homolog... 0.03 Orthogroups_2024-Update
Bradi1g22300 No alias Transducin/WD40 repeat-like superfamily protein 0.08 Orthogroups_2024-Update
Brara.B00615.1 No alias component *(WDR12) of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.03 Orthogroups_2024-Update
Cre17.g710100 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G050501 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.01G086000 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Kfl00456_0130 kfl00456_0130_v1.1 (at5g15550 : 334.0) Transducin/WD40 repeat-like... 0.03 Orthogroups_2024-Update
Mp3g03210.1 No alias component WDR12 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.02 Orthogroups_2024-Update
Potri.017G093300 No alias Transducin/WD40 repeat-like superfamily protein 0.07 Orthogroups_2024-Update
Seita.2G380200.1 No alias component *(WDR12) of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.06 Orthogroups_2024-Update
Sobic.002G365900.1 No alias component *(WDR12) of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.1 Orthogroups_2024-Update
evm.model.tig00021428.5 No alias (at5g15550 : 166.0) Transducin/WD40 repeat-like... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 322 348
IPR001680 WD40_repeat 207 240
IPR001680 WD40_repeat 145 190
IPR001680 WD40_repeat 357 394
IPR001680 WD40_repeat 273 306
IPR012972 NLE 17 84
No external refs found!