Sopen01g053360

Description : 'Cold-shock' DNA-binding domain

Gene families : OG_42_0001475 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001475_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen01g053360
Cluster	HCCA clusters: Cluster_141

Target	Alias	Description	ECC score	Gene Family Method
154869	No alias	cold shock domain protein 1	0.02	Orthogroups_2024-Update
A4A49_22407	No alias	cold shock protein 1	0.03	Orthogroups_2024-Update
Bradi1g02650	No alias	glycine-rich protein 2B	0.02	Orthogroups_2024-Update
Bradi2g07090	No alias	cold shock domain protein 1	0.04	Orthogroups_2024-Update
Solyc10g055250	No alias	LOW QUALITY:cold shock domain protein 1 (AHRD V3.3 ***...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002059	CSP_DNA-bd	10	74
IPR001878	Znf_CCHC	149	165
IPR001878	Znf_CCHC	194	210

External Links

No external refs found!