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  5. Solyc01g110070

Solyc01g110070


Description : Transposon-like element Lyt2-2 DNA (AHRD V3.3 *** D5MNY6_SOLLC)


Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g110070
Cluster HCCA clusters: Cluster_289

Target Alias Description ECC score Gene Family Method Actions
HORVU3Hr1G022720.2 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update
HORVU3Hr1G022760.2 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
InterPro domains Description Start Stop
IPR004330 FAR1_DNA_bnd_dom 33 119
IPR007527 Znf_SWIM 496 531
IPR018289 MULE_transposase_dom 241 335
No external refs found!