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  5. Solyc01g110100

Solyc01g110100


Description : RING/U-box superfamily protein (AHRD V3.3 *** AT3G53690.1)


Gene families : OG_42_0000330 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000330_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g110100
Cluster HCCA clusters: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Glyma.11G152542 No alias zinc finger (C3HC4-type RING finger) family protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G065280.8 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) 0.02 Orthogroups_2024-Update
Seita.2G215600.1 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) 0.02 Orthogroups_2024-Update
Sobic.002G203600.1 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) 0.02 Orthogroups_2024-Update
Sopen00g014080 No alias IBR domain 0.06 Orthogroups_2024-Update
Sopen06g001010 No alias IBR domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000781 chromosome, telomeric region IEP Predicted GO
CC GO:0000784 nuclear chromosome, telomeric region IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006023 aminoglycan biosynthetic process IEP Predicted GO
BP GO:0006024 glycosaminoglycan biosynthetic process IEP Predicted GO
BP GO:0006029 proteoglycan metabolic process IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006787 porphyrin-containing compound catabolic process IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
BP GO:0009100 glycoprotein metabolic process IEP Predicted GO
BP GO:0009101 glycoprotein biosynthetic process IEP Predicted GO
BP GO:0009147 pyrimidine nucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009200 deoxyribonucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009211 pyrimidine deoxyribonucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009219 pyrimidine deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0015012 heparan sulfate proteoglycan biosynthetic process IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Predicted GO
BP GO:0015994 chlorophyll metabolic process IEP Predicted GO
BP GO:0015996 chlorophyll catabolic process IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
BP GO:0019692 deoxyribose phosphate metabolic process IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
BP GO:0030166 proteoglycan biosynthetic process IEP Predicted GO
BP GO:0030201 heparan sulfate proteoglycan metabolic process IEP Predicted GO
BP GO:0030203 glycosaminoglycan metabolic process IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033015 tetrapyrrole catabolic process IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0042162 telomeric DNA binding IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
MF GO:0043047 single-stranded telomeric DNA binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0046080 dUTP metabolic process IEP Predicted GO
BP GO:0046149 pigment catabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0047746 chlorophyllase activity IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
CC GO:0098687 chromosomal region IEP Predicted GO
MF GO:0098847 sequence-specific single stranded DNA binding IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002867 IBR_dom 117 161
No external refs found!