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  5. Solyc01g110130

Solyc01g110130


Description : DNA helicase (AHRD V3.3 *** K4B3M6_SOLLC)


Gene families : OG_42_0007572 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007572_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g110130
Cluster HCCA clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
At2g16440 No alias DNA replication licensing factor MCM4... 0.07 Orthogroups_2024-Update
Bradi2g40600 No alias Minichromosome maintenance (MCM2/3/5) family protein 0.06 Orthogroups_2024-Update
Brara.C04147.1 No alias component *(MCM4) of MCM replicative DNA helicase complex 0.06 Orthogroups_2024-Update
Cre07.g316850 No alias Minichromosome maintenance (MCM2/3/5) family protein 0.11 Orthogroups_2024-Update
Glyma.11G113300 No alias Minichromosome maintenance (MCM2/3/5) family protein 0.09 Orthogroups_2024-Update
Glyma.12G039200 No alias Minichromosome maintenance (MCM2/3/5) family protein 0.09 Orthogroups_2024-Update
Kfl00033_0310 kfl00033_0310_v1.1 (at2g16440 : 825.0) MINICHROMOSOME MAINTENANCE 4 (MCM4);... 0.09 Orthogroups_2024-Update
Mp3g02380.1 No alias component MCM4 of MCM replicative DNA helicase complex 0.06 Orthogroups_2024-Update
Potri.009G121500 No alias Minichromosome maintenance (MCM2/3/5) family protein 0.04 Orthogroups_2024-Update
Pp1s172_96V6 No alias dna replication licensing factor mcm4 0.02 Orthogroups_2024-Update
Seita.5G192100.1 No alias component *(MCM4) of MCM replicative DNA helicase complex 0.11 Orthogroups_2024-Update
Sobic.003G183700.1 No alias component *(MCM4) of MCM replicative DNA helicase complex 0.12 Orthogroups_2024-Update
Sopen01g052290 No alias MCM2/3/5 family 0.07 Orthogroups_2024-Update
evm.model.contig_493.10 No alias (at2g16440 : 599.0) MINICHROMOSOME MAINTENANCE 4 (MCM4);... 0.06 Orthogroups_2024-Update
evm.model.tig00000144.164 No alias (at2g16440 : 634.0) MINICHROMOSOME MAINTENANCE 4 (MCM4);... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006260 DNA replication IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Predicted GO
CC GO:0000808 origin recognition complex IEP Predicted GO
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0003896 DNA primase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
CC GO:0042555 MCM complex IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR033762 MCM_OB 223 352
IPR027925 MCM_N 128 209
IPR001208 MCM_dom 409 734
No external refs found!