Sopen02g002740

Description : Photosynthetic reaction centre protein

Gene families : OG_42_0001749 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001749_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen02g002740
Cluster	HCCA clusters: Cluster_30

Target	Alias	Description	ECC score	Gene Family Method
236852	No alias	photosystem II reaction center protein A	0.03	Orthogroups_2024-Update
Bradi4g19720	No alias	photosystem II reaction center protein A	0.03	Orthogroups_2024-Update
Bradi5g10967	No alias	photosystem II reaction center protein A	0.03	Orthogroups_2024-Update
Brara.B03183.1	No alias	Unknown function	0.05	Orthogroups_2024-Update
HORVU1Hr1G017870.1	No alias	Unknown function	0.07	Orthogroups_2024-Update
HORVU2Hr1G062060.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU2Hr1G121700.2	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU2Hr1G121820.5	No alias	component *(PsbA/D1) of PS-II reaction center complex	0.05	Orthogroups_2024-Update
HORVU3Hr1G004790.1	No alias	Unknown function	0.06	Orthogroups_2024-Update
LOC_Os08g35420	No alias	photosynthetic reaction center protein, putative, expressed	0.03	Orthogroups_2024-Update
Mp3g12650.1	No alias	Photosystem II protein D1 OS=Marchantia polymorpha...	0.04	Orthogroups_2024-Update
Mp8g01990.1	No alias	no hits & (original description: none)	0.03	Orthogroups_2024-Update
PSME_00003759-RA	No alias	(p69551\|psba_pinth : 308.0) Photosystem Q(B) protein (32...	0.03	Orthogroups_2024-Update
PSME_00021857-RA	No alias	(p69551\|psba_pinth : 509.0) Photosystem Q(B) protein (32...	0.05	Orthogroups_2024-Update
Seita.J017900.1	No alias	component *(PsbA/D1) of PS-II reaction center complex	0.07	Orthogroups_2024-Update
Solyc01g097530	No alias	LOW QUALITY:Photosystem II 32 kDa protein (AHRD V3.3 ***...	0.03	Orthogroups_2024-Update
Solyc02g011990	No alias	Photosystem II protein D1 (AHRD V3.3 *** F1KC16_9ASTE)	0.13	Orthogroups_2024-Update
Solyc05g016120	No alias	Photosystem II protein D1 (AHRD V3.3 - PSBA_BARVE)	0.15	Orthogroups_2024-Update
Solyc11g056340	No alias	LOW QUALITY:Photosystem II protein D1 (AHRD V3.3 - PSBA_SOLNI)	0.12	Orthogroups_2024-Update
Solyc12g039030	No alias	LOW QUALITY:Photosystem II protein D1 (AHRD V3.3 - PSBA_CUSOB)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006812	cation transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0009055	electron transfer activity	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009123	nucleoside monophosphate metabolic process	None	Extended
BP	GO:0009126	purine nucleoside monophosphate metabolic process	None	Extended
BP	GO:0009141	nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009144	purine nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009161	ribonucleoside monophosphate metabolic process	None	Extended
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	None	Extended
BP	GO:0009199	ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009767	photosynthetic electron transport chain	None	Extended
BP	GO:0009772	photosynthetic electron transport in photosystem II	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015672	monovalent inorganic cation transport	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
BP	GO:0017144	drug metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019684	photosynthesis, light reaction	IEA	InterProScan predictions
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0022900	electron transport chain	None	Extended
BP	GO:0034220	ion transmembrane transport	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
MF	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	IEA	InterProScan predictions
BP	GO:0046034	ATP metabolic process	IEA	InterProScan predictions
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0055114	oxidation-reduction process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0098655	cation transmembrane transport	None	Extended
BP	GO:0098660	inorganic ion transmembrane transport	None	Extended
BP	GO:0098662	inorganic cation transmembrane transport	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1902600	proton transmembrane transport	IEA	InterProScan predictions

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004100	ATPase_F1/V1/A1_a/bsu_N	29	79
IPR000484	Photo_RC_L/M	119	181
IPR000484	Photo_RC_L/M	177	232

External Links

No external refs found!

Sopen02g002740

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation