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  5. Sopen02g003370

Sopen02g003370


Description : PPR repeat family


Gene families : OG_42_0009389 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009389_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g003370
Cluster HCCA clusters: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
At4g14850 No alias Pentatricopeptide repeat-containing protein At4g14850... 0.03 Orthogroups_2024-Update
Brara.E01415.1 No alias RNA editing factor *(MEF11) 0.02 Orthogroups_2024-Update
Potri.010G086900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G047500.1 No alias RNA editing factor *(MEF11) 0.02 Orthogroups_2024-Update
Seita.8G163100.1 No alias RNA editing factor *(MEF11) 0.04 Orthogroups_2024-Update
Solyc02g014360 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 74 119
IPR002885 Pentatricopeptide_repeat 378 427
IPR002885 Pentatricopeptide_repeat 455 478
IPR002885 Pentatricopeptide_repeat 153 176
IPR002885 Pentatricopeptide_repeat 279 309
IPR032867 DYW_dom 554 677
No external refs found!