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  5. Sopen02g004760

Sopen02g004760


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g004760
Cluster HCCA clusters: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
At1g42190 No alias GAG/POL/ENV polyprotein [Source:UniProtKB/TrEMBL;Acc:Q9C763] 0.02 Orthogroups_2024-Update
Cre08.g358542 No alias Function unknown 0.01 Orthogroups_2024-Update
Kfl00821_g9 kfl00821_g9_v1.1 no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
LOC_Os01g45290 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g24400 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Potri.001G260400 No alias Function unknown 0.02 Orthogroups_2024-Update
Solyc10g054430 No alias No description available 0.02 Orthogroups_2024-Update
Sopen01g010380 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen01g012260 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen01g013800 No alias Chromo (CHRromatin Organisation MOdifier) domain 0.03 Orthogroups_2024-Update
Sopen01g026660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g006530 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g010930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g004730 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen09g012210 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen09g023520 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g025830 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 719 879
IPR005162 Retrotrans_gag_dom 162 258
IPR001584 Integrase_cat-core 1259 1370
No external refs found!