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  5. Solyc01g009100

Solyc01g009100


Description : 60S ribosomal protein L30 (AHRD V3.3 *** RL30_LUPLU)


Gene families : OG_42_0001724 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001724_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g009100
Cluster HCCA clusters: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
19071 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.17 Orthogroups_2024-Update
A4A49_02333 No alias 60s ribosomal protein l30-2 0.16 Orthogroups_2024-Update
A4A49_19973 No alias 60s ribosomal protein l30-2 0.17 Orthogroups_2024-Update
A4A49_60378 No alias 60s ribosomal protein l30-2 0.06 Orthogroups_2024-Update
At1g77940 No alias 60S ribosomal protein L30-2... 0.03 Orthogroups_2024-Update
At3g18740 No alias 60S ribosomal protein L30-3... 0.03 Orthogroups_2024-Update
Bradi1g31460 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.16 Orthogroups_2024-Update
Bradi2g10400 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.09 Orthogroups_2024-Update
Bradi2g21770 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.08 Orthogroups_2024-Update
Brara.A02913.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.39 Orthogroups_2024-Update
Brara.C03701.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.41 Orthogroups_2024-Update
Brara.E02321.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.28 Orthogroups_2024-Update
Brara.G02123.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.19 Orthogroups_2024-Update
Brara.G03541.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Cre10.g420750 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.29 Orthogroups_2024-Update
GRMZM2G027728 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.02 Orthogroups_2024-Update
GRMZM2G044137 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.09 Orthogroups_2024-Update
Glyma.02G002300 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.16 Orthogroups_2024-Update
Glyma.08G257100 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.19 Orthogroups_2024-Update
Glyma.10G002400 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.21 Orthogroups_2024-Update
Glyma.18G281200 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.13 Orthogroups_2024-Update
HORVU1Hr1G068640.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
HORVU3Hr1G038950.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
HORVU7Hr1G110660.2 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Kfl00019_0450 kfl00019_0450_v1.1 (o49884|rl30_luplu : 186.0) 60S ribosomal protein L30 -... 0.02 Orthogroups_2024-Update
LOC_Os01g16890 No alias ribosomal protein L7Ae, putative, expressed 0.09 Orthogroups_2024-Update
LOC_Os01g59730 No alias ribosomal protein L7Ae, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g41110 No alias ribosomal protein L7Ae, putative, expressed 0.08 Orthogroups_2024-Update
MA_10431626g0010 No alias (o49884|rl30_luplu : 184.0) 60S ribosomal protein L30 -... 0.07 Orthogroups_2024-Update
MA_6354g0010 No alias (o49884|rl30_luplu : 204.0) 60S ribosomal protein L30 -... 0.14 Orthogroups_2024-Update
Mp7g01690.1 No alias component RPL30 of LSU proteome component 0.1 Orthogroups_2024-Update
PSME_00026808-RA No alias (o49884|rl30_luplu : 160.0) 60S ribosomal protein L30 -... 0.17 Orthogroups_2024-Update
PSME_00033349-RA No alias (o49884|rl30_luplu : 192.0) 60S ribosomal protein L30 -... 0.14 Orthogroups_2024-Update
Potri.004G196500 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.04 Orthogroups_2024-Update
Potri.007G086800 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.08 Orthogroups_2024-Update
Potri.009G158700 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.11 Orthogroups_2024-Update
Pp1s106_167V6 No alias ribosomal protein l30 0.2 Orthogroups_2024-Update
Pp1s13_391V6 No alias ribosomal protein l30 0.4 Orthogroups_2024-Update
Pp1s41_251V6 No alias ribosomal protein l30 0.31 Orthogroups_2024-Update
Pp1s50_55V6 No alias ribosomal protein l30 0.04 Orthogroups_2024-Update
Pp1s91_111V6 No alias ribosomal protein l30 0.07 Orthogroups_2024-Update
Seita.3G197300.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Seita.5G043000.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sobic.009G179100.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.28 Orthogroups_2024-Update
Sopen01g004590 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 0.36 Orthogroups_2024-Update
Sopen04g028860 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 0.06 Orthogroups_2024-Update
Sopen11g029180 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 0.32 Orthogroups_2024-Update
evm.model.contig_3502.5 No alias (q9sdg6|rl30_orysa : 151.0) 60S ribosomal protein L30 -... 0.47 Orthogroups_2024-Update
evm.model.tig00001164.6 No alias (o49884|rl30_luplu : 168.0) 60S ribosomal protein L30 -... 0.33 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 13 105
No external refs found!