Solyc01g110630

Description : Small auxin up-regulated RNA9

Gene families : OG_42_0000038 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000038_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc01g110630
Cluster	HCCA clusters: Cluster_204

Target	Alias	Description	ECC score	Gene Family Method
Glyma.06G006700	No alias	SAUR-like auxin-responsive protein family	0.03	Orthogroups_2024-Update
Potri.004G165000	No alias	SAUR-like auxin-responsive protein family	0.02	Orthogroups_2024-Update
Pp1s339_29V6	No alias	indole-3-acetic acid-induced protein	0.02	Orthogroups_2024-Update
Solyc01g110590	No alias	Small auxin up-regulated RNA6	0.05	Orthogroups_2024-Update
Solyc01g110720	No alias	SAUR-like auxin-responsive protein family (AHRD V3.3 ***...	0.04	Orthogroups_2024-Update
Solyc01g110860	No alias	SAUR-like auxin-responsive protein family (AHRD V3.3 ***...	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IEA	InterProScan predictions
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0050896	response to stimulus	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004650	polygalacturonase activity	IEP	Predicted GO
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Predicted GO
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	Predicted GO
MF	GO:0030570	pectate lyase activity	IEP	Predicted GO
MF	GO:0043531	ADP binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003676	SAUR_fam	27	104

External Links

No external refs found!