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  5. Sopen02g006530

Sopen02g006530


Description : Integrase core domain


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g006530
Cluster HCCA clusters: Cluster_396

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.01 Orthogroups_2024-Update
LOC_Os10g42880 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Sopen01g012260 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen01g012860 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen02g004760 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen03g017250 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen03g021380 No alias Reverse transcriptase-like 0.03 Orthogroups_2024-Update
Sopen05g017590 No alias Retrotransposon gag protein 0.03 Orthogroups_2024-Update
Sopen06g012340 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen07g008930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen07g021480 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen08g015130 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen10g015090 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen11g009630 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen11g009960 No alias Retrotransposon gag protein 0.03 Orthogroups_2024-Update
Sopen11g022280 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g023740 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g025830 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen12g025510 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 236 347
No external refs found!