Sopen02g009430

Description : Vps54-like protein

Gene families : OG_42_0003381 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003381_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen02g009430
Cluster	HCCA clusters: Cluster_218

Target	Alias	Description	ECC score	Gene Family Method
Cre02.g087551	No alias	VPS54	0.02	Orthogroups_2024-Update
Seita.7G040600.1	No alias	GARP-specific component *(VPS54) of GARP/EARP...	0.04	Orthogroups_2024-Update
evm.model.contig_4529.1	No alias	(at4g19490 : 91.3) Putative homolog of yeast Vps54....	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
BP	GO:0016482	cytosolic transport	None	Extended
BP	GO:0042147	retrograde transport, endosome to Golgi	IEA	InterProScan predictions
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR012501	Vps54_C	734	865

External Links

No external refs found!