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  5. Sopen02g009570

Sopen02g009570


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g009570
Cluster HCCA clusters: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Kfl01111_0020 kfl01111_0020_v1.1 (original description: no original description) 0.01 Orthogroups_2024-Update
LOC_Os04g49790 No alias retrotransposon protein, putative, Ty1-copia subclass, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g40640 No alias retrotransposon protein, putative, Ty1-copia subclass, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g01440 No alias retrotransposon protein, putative, Ty1-copia subclass 0.02 Orthogroups_2024-Update
LOC_Os10g30510 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Solyc03g093580 No alias No description available 0.03 Orthogroups_2024-Update
Solyc04g011970 No alias No description available 0.03 Orthogroups_2024-Update
Sopen01g003530 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g025970 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen01g028070 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen02g009580 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen03g025800 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g023540 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen09g015440 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g017310 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen10g017070 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen11g019960 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen12g024140 No alias hypothetical protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 407 461
IPR001584 Integrase_cat-core 478 591
IPR013103 RVT_2 839 1082
No external refs found!