1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen02g011110

Sopen02g011110


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g011110
Cluster HCCA clusters: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Cre01.g006402 No alias Function unknown 0.02 Orthogroups_2024-Update
Cre08.g358542 No alias Function unknown 0.02 Orthogroups_2024-Update
Cre10.g423050 No alias DNA/RNA polymerases superfamily protein 0.01 Orthogroups_2024-Update
LOC_Os07g33450 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g42880 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Sopen00g001490 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen00g005290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g009050 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g012260 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen01g012860 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen02g012310 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen04g007630 No alias Chromo (CHRromatin Organisation MOdifier) domain 0.03 Orthogroups_2024-Update
Sopen05g016830 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g004930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g021480 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen07g021860 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g007650 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen10g015090 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen11g012620 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g021290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g011740 No alias Integrase core domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 628 787
IPR001584 Integrase_cat-core 1053 1164
IPR023780 Chromo_domain 1336 1389
No external refs found!