Sopen02g011920

Description : Auxin response factor

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen02g011920
Cluster	HCCA clusters: Cluster_286

Target	Alias	Description	ECC score	Gene Family Method
A4A49_07736	No alias	auxin response factor 5	0.03	Orthogroups_2024-Update
AC207656.3_FG002	No alias	auxin response factor 16	0.02	Orthogroups_2024-Update
At3g61830	No alias	Auxin response factor 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5W9]	0.04	Orthogroups_2024-Update
Brara.A01401.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.B03784.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.D02066.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.F02033.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Brara.G01369.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.G02126.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.G02608.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.H02379.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.02	Orthogroups_2024-Update
Brara.I02823.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Brara.K00731.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G116557	No alias	auxin response factor 2	0.04	Orthogroups_2024-Update
GRMZM2G437460	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.17G047100	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
MA_10432580g0010	No alias	(at5g62000 : 779.0) Encodes an auxin response factor....	0.03	Orthogroups_2024-Update
Potri.004G078200	No alias	auxin response factor 8	0.05	Orthogroups_2024-Update
Seita.3G147000.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.4G262300.1	No alias	ARF-type transcription factor	0.04	Orthogroups_2024-Update
Seita.5G321300.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.5G438100.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.6G212000.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.02	Orthogroups_2024-Update
Seita.9G219800.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.003G003800.1	No alias	ARF-type transcription factor	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR010525	Auxin_resp	247	330
IPR003340	B3_DNA-bd	121	222
IPR033389	AUX/IAA_dom	706	795

External Links

No external refs found!

Sopen02g011920

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation