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  5. Sopen02g012390

Sopen02g012390


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g012390
Cluster HCCA clusters: Cluster_339

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.02 Orthogroups_2024-Update
Kfl00590_0100 kfl00590_0100_v1.1 no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
LOC_Os02g17292 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g24400 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Pp1s5_46V6 No alias No description available 0.02 Orthogroups_2024-Update
Solyc01g020250 No alias No description available 0.03 Orthogroups_2024-Update
Solyc03g115130 No alias No description available 0.02 Orthogroups_2024-Update
Solyc04g040100 No alias No description available 0.02 Orthogroups_2024-Update
Solyc08g043150 No alias No description available 0.03 Orthogroups_2024-Update
Solyc09g059000 No alias No description available 0.03 Orthogroups_2024-Update
Solyc10g012010 No alias No description available 0.02 Orthogroups_2024-Update
Solyc10g047790 No alias No description available 0.03 Orthogroups_2024-Update
Sopen00g001490 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen01g008200 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g026660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen05g011340 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g026780 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen07g004430 No alias gag-polypeptide of LTR copia-type 0.04 Orthogroups_2024-Update
Sopen07g004930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen08g015130 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g027770 No alias Cytochrome P450 0.03 Orthogroups_2024-Update
Sopen09g030490 No alias Retroviral aspartyl protease 0.04 Orthogroups_2024-Update
Sopen10g020660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g009960 No alias Retrotransposon gag protein 0.04 Orthogroups_2024-Update
Sopen11g012620 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen11g022600 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g019980 No alias Integrase core domain 0.04 Orthogroups_2024-Update
evm.model.tig00000042.123 No alias (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR023780 Chromo_domain 1468 1521
IPR000477 RT_dom 656 813
IPR001584 Integrase_cat-core 1162 1273
IPR005162 Retrotrans_gag_dom 151 246
No external refs found!