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Description : LOW QUALITY:Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A061DY90_THECC)
Gene families : OG_42_0011426 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0011426_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc01g111430 | |
| Cluster | HCCA clusters: Cluster_180 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Seita.5G425100.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
| Sobic.003G236150.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003883 | CTP synthase activity | IEP | Predicted GO |
| CC | GO:0005737 | cytoplasm | IEP | Predicted GO |
| CC | GO:0005739 | mitochondrion | IEP | Predicted GO |
| BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | Predicted GO |
| BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | Predicted GO |
| BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Predicted GO |
| MF | GO:0008252 | nucleotidase activity | IEP | Predicted GO |
| MF | GO:0008253 | 5'-nucleotidase activity | IEP | Predicted GO |
| MF | GO:0008649 | rRNA methyltransferase activity | IEP | Predicted GO |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Predicted GO |
| CC | GO:0009523 | photosystem II | IEP | Predicted GO |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Predicted GO |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
| MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | Predicted GO |
| CC | GO:0019898 | extrinsic component of membrane | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Predicted GO |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
| MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | Predicted GO |
| CC | GO:1990204 | oxidoreductase complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 525 | 572 |
| IPR002885 | Pentatricopeptide_repeat | 498 | 521 |
| IPR002885 | Pentatricopeptide_repeat | 95 | 120 |
| IPR002885 | Pentatricopeptide_repeat | 194 | 221 |
| IPR002885 | Pentatricopeptide_repeat | 323 | 349 |
| IPR002885 | Pentatricopeptide_repeat | 121 | 151 |
| IPR002885 | Pentatricopeptide_repeat | 424 | 447 |
| IPR002885 | Pentatricopeptide_repeat | 223 | 252 |
| No external refs found! |