1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen02g015160

Sopen02g015160


Description : PPR repeat


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g015160
Cluster HCCA clusters: Cluster_323

Target Alias Description ECC score Gene Family Method Actions
103939 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
111998 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
118828 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
A4A49_23672 No alias pentatricopeptide repeat-containing protein, mitochondrial 0.03 Orthogroups_2024-Update
At3g02010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
At4g18840 No alias Pentatricopeptide repeat-containing protein At4g18840... 0.04 Orthogroups_2024-Update
At5g52850 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.03 Orthogroups_2024-Update
At5g59200 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
Bradi1g36120 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g45097 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g72290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g04723 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g09441 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g20810 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.B03138.1 No alias RNA editing factor *(OTP85) 0.02 Orthogroups_2024-Update
Brara.D02088.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.02G043900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G285432 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G206900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G006200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.12G102800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G332400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G016600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G273200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G221300 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
HORVU5Hr1G047290.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G051030.9 No alias RNA editing factor *(REME1) 0.03 Orthogroups_2024-Update
PSME_00014011-RA No alias (at4g18750 : 152.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00017819-RA No alias (at3g03580 : 689.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00056153-RA No alias (at2g13600 : 519.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Potri.001G019500 No alias SLOW GROWTH 1 0.03 Orthogroups_2024-Update
Potri.001G066100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.002G175900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.004G059400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.010G161800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Potri.018G067500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G205700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.1G290500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.4G225800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G124400.1 No alias RNA editing factor *(OTP81) 0.02 Orthogroups_2024-Update
Seita.7G205600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.8G017200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G436600.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G290400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.010G066900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g006920 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc01g081560 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
Solyc01g090510 No alias Pentatricopeptide repeat-containing protein, putative... 0.04 Orthogroups_2024-Update
Solyc01g100800 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc02g080350 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Solyc03g006990 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc03g063690 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc03g093630 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc03g097850 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc04g064750 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc05g023900 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc07g055310 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc11g011860 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.03 Orthogroups_2024-Update
Solyc11g071370 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc12g042400 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Sopen07g003070 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 428 451
IPR002885 Pentatricopeptide_repeat 334 357
IPR002885 Pentatricopeptide_repeat 597 624
IPR002885 Pentatricopeptide_repeat 257 284
IPR002885 Pentatricopeptide_repeat 530 554
IPR002885 Pentatricopeptide_repeat 455 503
IPR002885 Pentatricopeptide_repeat 189 237
IPR002885 Pentatricopeptide_repeat 88 136
IPR002885 Pentatricopeptide_repeat 359 402
No external refs found!