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  5. Sopen02g015640

Sopen02g015640


Description : gag-polypeptide of LTR copia-type


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g015640
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Cre03.g183950 No alias cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.01 Orthogroups_2024-Update
Solyc04g011970 No alias No description available 0.03 Orthogroups_2024-Update
Sopen00g011290 No alias gag-polypeptide of LTR copia-type 0.05 Orthogroups_2024-Update
Sopen01g007200 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g011060 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen05g009400 No alias gag-polypeptide of LTR copia-type 0.04 Orthogroups_2024-Update
Sopen05g024980 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen06g015850 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen08g004660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g027810 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen10g017070 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen10g024360 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g014800 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g022840 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 233 247
No external refs found!