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  5. Sopen02g016120

Sopen02g016120


Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g016120
Cluster HCCA clusters: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
140819 No alias glycine-rich RNA-binding protein 4 0.02 Orthogroups_2024-Update
406315 No alias glycine-rich RNA-binding protein 4 0.02 Orthogroups_2024-Update
81392 No alias glycine-rich RNA-binding protein 3 0.02 Orthogroups_2024-Update
A4A49_03158 No alias glycine-rich rna-binding protein 4, mitochondrial 0.06 Orthogroups_2024-Update
A4A49_14417 No alias glycine-rich rna-binding protein 7 0.07 Orthogroups_2024-Update
A4A49_27149 No alias glycine-rich rna-binding protein 6, mitochondrial 0.03 Orthogroups_2024-Update
A4A49_27721 No alias glycine-rich rna-binding protein 0.03 Orthogroups_2024-Update
A4A49_62682 No alias glycine-rich rna-binding protein 0.04 Orthogroups_2024-Update
At2g21660 No alias Glycine-rich RNA-binding protein 7... 0.04 Orthogroups_2024-Update
At4g39260 No alias Glycine-rich RNA-binding protein 8... 0.03 Orthogroups_2024-Update
Bradi1g02570 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.04 Orthogroups_2024-Update
Bradi1g12787 No alias cold, circadian rhythm, and RNA binding 1 0.02 Orthogroups_2024-Update
Bradi4g00940 No alias cold, circadian rhythm, and RNA binding 1 0.02 Orthogroups_2024-Update
Brara.K01454.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G113513 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Glyma.05G020900 No alias glycine-rich RNA-binding protein 3 0.03 Orthogroups_2024-Update
Glyma.11G117300 No alias cold, circadian rhythm, and rna binding 2 0.02 Orthogroups_2024-Update
Glyma.11G117600 No alias cold, circadian rhythm, and rna binding 2 0.03 Orthogroups_2024-Update
Glyma.11G255000 No alias glycine-rich RNA-binding protein 2 0.03 Orthogroups_2024-Update
Glyma.12G043000 No alias cold, circadian rhythm, and RNA binding 1 0.03 Orthogroups_2024-Update
Glyma.18G266500 No alias glycine-rich RNA-binding protein 3 0.03 Orthogroups_2024-Update
HORVU3Hr1G092880.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G093400.1 No alias RNA editing factor *(ORRM3) 0.04 Orthogroups_2024-Update
HORVU4Hr1G059000.3 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU5Hr1G002150.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU5Hr1G118010.1 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os01g68790 No alias RNA recognition motif containing protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os03g61990 No alias glycine-rich RNA-binding protein 7, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g04440 No alias RNA recognition motif containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g31800 No alias glycine-rich RNA-binding protein 7, putative, expressed 0.03 Orthogroups_2024-Update
MA_10436734g0010 No alias (at5g61030 : 122.0) encodes a glycine-rich RNA binding... 0.02 Orthogroups_2024-Update
Mp4g15980.1 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Orthogroups_2024-Update
PSME_00004460-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Potri.004G155300 No alias cold, circadian rhythm, and RNA binding 1 0.04 Orthogroups_2024-Update
Potri.009G116400 No alias cold, circadian rhythm, and RNA binding 1 0.04 Orthogroups_2024-Update
Potri.017G059000 No alias glycine-rich RNA-binding protein 2 0.02 Orthogroups_2024-Update
Pp1s123_58V6 No alias glycine-rich rna-binding protein 2 0.03 Orthogroups_2024-Update
Pp1s136_70V6 No alias glycine-rich rna-binding protein 0.03 Orthogroups_2024-Update
Pp1s42_251V6 No alias glycine-rich rna-binding protein 2 0.02 Orthogroups_2024-Update
Seita.2G062600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G427300.1 No alias RNA editing factor *(ORRM3) 0.05 Orthogroups_2024-Update
Sobic.001G141300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G401400.1 No alias RNA editing factor *(ORRM3) 0.03 Orthogroups_2024-Update
Solyc01g109660 No alias meloidogyne-induced giant cell protein DB275 0.1 Orthogroups_2024-Update
Solyc07g049270 No alias RNA binding protein (AHRD V3.3 *** A0A0K9NY52_ZOSMR) 0.02 Orthogroups_2024-Update
Solyc09g092320 No alias RNA binding protein (AHRD V3.3 *** O23793_NICSY) 0.02 Orthogroups_2024-Update
Solyc10g051390 No alias RNA-binding glycine-rich protein (AHRD V3.3 *** D6PZY6_TOBAC) 0.12 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 42 112
No external refs found!