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  5. Solyc01g111640

Solyc01g111640


Description : SKP1-like protein (AHRD V3.3 *** C3V9V9_CITMA)


Gene families : OG_42_0000356 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000356_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g111640
Cluster HCCA clusters: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
At1g75950 No alias SKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255] 0.03 Orthogroups_2024-Update
At3g21860 No alias SKP1-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSX8] 0.02 Orthogroups_2024-Update
At3g60010 No alias SK13 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM9] 0.04 Orthogroups_2024-Update
Potri.004G175900 No alias E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein 0.04 Orthogroups_2024-Update
Sobic.010G218900.2 No alias ASK-type linker component of SCF E3 ubiquitin ligase complexes 0.03 Orthogroups_2024-Update
evm.model.contig_494.7 No alias (at4g34210 : 147.0) one of 20 SKP1 homologs in... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
InterPro domains Description Start Stop
IPR016073 Skp1_comp_POZ 5 64
IPR016072 Skp1_comp_dimer 109 156
No external refs found!