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  5. Sopen02g017710

Sopen02g017710


Description : SNF2 family N-terminal domain


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g017710
Cluster HCCA clusters: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
130534 No alias chromatin remodeling 4 0.02 Orthogroups_2024-Update
177985 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
440815 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
AC235535.1_FG001 No alias chromatin-remodeling protein 11 0.03 Orthogroups_2024-Update
At2g25170 No alias chromatin remodeling factor CHD3 (PICKLE)... 0.03 Orthogroups_2024-Update
At3g06400 No alias Chromatin-remodeling complex ATPase... 0.04 Orthogroups_2024-Update
At5g19310 No alias Probable ATP-dependent DNA helicase CHR23... 0.03 Orthogroups_2024-Update
Bradi1g18910 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
Bradi1g44177 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Bradi1g47367 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
Bradi2g35740 No alias chromatin-remodeling protein 11 0.02 Orthogroups_2024-Update
GRMZM2G010342 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
GRMZM2G316191 No alias chromatin remodeling 4 0.05 Orthogroups_2024-Update
Glyma.02G281000 No alias chromatin remodeling 5 0.04 Orthogroups_2024-Update
Glyma.04G062400 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Orthogroups_2024-Update
Glyma.05G131500 No alias chromatin remodeling 4 0.03 Orthogroups_2024-Update
Glyma.08G086100 No alias chromatin remodeling 4 0.04 Orthogroups_2024-Update
Glyma.11G004100 No alias Homeotic gene regulator 0.04 Orthogroups_2024-Update
Glyma.14G033600 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
Glyma.15G097000 No alias chromatin remodeling factor17 0.06 Orthogroups_2024-Update
Glyma.17G022300 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Glyma.17G023600 No alias chromatin remodeling factor17 0.02 Orthogroups_2024-Update
HORVU1Hr1G021540.17 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.02 Orthogroups_2024-Update
HORVU2Hr1G022450.1 No alias component *(CHR5) of SAGA transcription co-activator... 0.03 Orthogroups_2024-Update
HORVU7Hr1G041450.33 No alias SMARCA component *(SYD/BRM/MINU) 0.03 Orthogroups_2024-Update
Kfl00010_0280 kfl00010_0280_v1.1 (at3g06010 : 961.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.04 Orthogroups_2024-Update
LOC_Os05g05780 No alias chromatin-remodeling complex ATPase chain, putative, expressed 0.04 Orthogroups_2024-Update
MA_10429361g0010 No alias (at2g13370 : 1371.0) chromatin remodeling 5 (CHR5);... 0.02 Orthogroups_2024-Update
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Orthogroups_2024-Update
Mp1g18560.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Orthogroups_2024-Update
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.03 Orthogroups_2024-Update
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.02 Orthogroups_2024-Update
PSME_00001593-RA No alias (at2g13370 : 1311.0) chromatin remodeling 5 (CHR5);... 0.03 Orthogroups_2024-Update
PSME_00015826-RA No alias (at3g06010 : 472.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.02 Orthogroups_2024-Update
PSME_00020446-RA No alias (at2g44980 : 160.0) SNF2 domain-containing protein /... 0.02 Orthogroups_2024-Update
Potri.003G110100 No alias chromatin remodeling 4 0.04 Orthogroups_2024-Update
Potri.008G205600 No alias chromatin remodeling factor17 0.03 Orthogroups_2024-Update
Pp1s235_76V6 No alias chromatin remodeling complex subunit 0.02 Orthogroups_2024-Update
Seita.2G320900.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.03 Orthogroups_2024-Update
Sobic.003G163200.1 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 Orthogroups_2024-Update
Sobic.010G065300.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.02 Orthogroups_2024-Update
evm.model.contig_2077.13 No alias (at2g13370 : 595.0) chromatin remodeling 5 (CHR5);... 0.02 Orthogroups_2024-Update
evm.model.tig00000802.67 No alias (at3g06010 : 465.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.02 Orthogroups_2024-Update
evm.model.tig00020960.24 No alias (at2g13370 : 202.0) chromatin remodeling 5 (CHR5);... 0.02 Orthogroups_2024-Update
evm.model.tig00021623.13 No alias (at2g25170 : 464.0) Encodes a SWI/SWF nuclear-localized... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 1078 1190
IPR023780 Chromo_domain 670 719
IPR023780 Chromo_domain 611 652
IPR000330 SNF2_N 775 1053
IPR019787 Znf_PHD-finger 78 121
IPR009463 DUF1087 1366 1412
No external refs found!