1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen02g017930

Sopen02g017930


Description : PPR repeat family


Gene families : OG_42_0008902 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008902_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g017930
Cluster HCCA clusters: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
A4A49_01679 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
Glyma.20G109800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G032270.20 No alias ndhA-specific mRNA splicing factor 0.03 Orthogroups_2024-Update
LOC_Os02g07360 No alias pentatricopeptide containing protein, putative, expressed 0.03 Orthogroups_2024-Update
Potri.012G122800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Solyc02g068760 No alias Pentatricopeptide repeat-containing protein, putative... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR033443 PPR_long 254 396
IPR002885 Pentatricopeptide_repeat 209 238
IPR002885 Pentatricopeptide_repeat 174 196
IPR002885 Pentatricopeptide_repeat 488 515
IPR002885 Pentatricopeptide_repeat 404 463
IPR002885 Pentatricopeptide_repeat 520 568
No external refs found!