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  5. Sopen02g018930

Sopen02g018930


Description : WD domain, G-beta repeat


Gene families : OG_42_0006077 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006077_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g018930
Cluster HCCA clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
A4A49_16896 No alias u3 snornp-associated protein-like yaoh 0.02 Orthogroups_2024-Update
At4g05410 No alias U3 snoRNP-associated protein-like YAO... 0.06 Orthogroups_2024-Update
Bradi4g01810 No alias Transducin/WD40 repeat-like superfamily protein 0.09 Orthogroups_2024-Update
Brara.C02749.1 No alias SSU processome assembly factor *(RRP9/YAO1) 0.06 Orthogroups_2024-Update
Brara.I02128.1 No alias SSU processome assembly factor *(RRP9/YAO1) 0.04 Orthogroups_2024-Update
Cre06.g278175 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU5Hr1G010440.3 No alias SSU processome assembly factor *(RRP9/YAO1) 0.07 Orthogroups_2024-Update
Kfl00603_0070 kfl00603_0070_v1.1 (at4g05410 : 283.0) Encodes a nucleolar protein with... 0.01 Orthogroups_2024-Update
Mp8g03800.1 No alias SSU processome assembly factor (RRP9/YAO1) 0.02 Orthogroups_2024-Update
Potri.007G107900 No alias Transducin/WD40 repeat-like superfamily protein 0.09 Orthogroups_2024-Update
Pp1s37_119V6 No alias u3 snornp-associated-like protein 0.07 Orthogroups_2024-Update
Seita.9G158600.1 No alias SSU processome assembly factor *(RRP9/YAO1) 0.14 Orthogroups_2024-Update
Sobic.001G157300.1 No alias SSU processome assembly factor *(RRP9/YAO1) 0.1 Orthogroups_2024-Update
Solyc02g069770 No alias WD40-repeat domain-contaning protein 0.15 Orthogroups_2024-Update
evm.model.contig_4445.1 No alias (at4g05410 : 237.0) Encodes a nucleolar protein with... 0.03 Orthogroups_2024-Update
evm.model.tig00021179.21 No alias (at4g05410 : 272.0) Encodes a nucleolar protein with... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 223 253
IPR001680 WD40_repeat 258 295
IPR001680 WD40_repeat 342 376
No external refs found!