Sopen02g019030

Description : Seven in absentia protein family

Gene families : OG_42_0000730 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000730_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen02g019030
Cluster	HCCA clusters: Cluster_137

Target	Alias	Description	ECC score	Gene Family Method
97849	No alias	Protein with RING/U-box and TRAF-like domains	0.02	Orthogroups_2024-Update
98090	No alias	Protein with RING/U-box and TRAF-like domains	0.02	Orthogroups_2024-Update
At3g61790	No alias	E3 ubiquitin-protein ligase...	0.03	Orthogroups_2024-Update
Bradi2g31640	No alias	Protein with RING/U-box and TRAF-like domains	0.02	Orthogroups_2024-Update
Brara.D02556.1	No alias	E3 ubiquitin ligase *(SINA)	0.04	Orthogroups_2024-Update
LOC_Os03g24040	No alias	seven in absentia protein family domain containing...	0.02	Orthogroups_2024-Update
PSME_00051099-RA	No alias	(at3g61790 : 368.0) Protein with RING/U-box and...	0.04	Orthogroups_2024-Update
Potri.016G059700	No alias	seven in absentia of Arabidopsis 2	0.02	Orthogroups_2024-Update
Seita.2G419400.1	No alias	E3 ubiquitin ligase *(SINA)	0.02	Orthogroups_2024-Update
Seita.5G005200.1	No alias	E3 ubiquitin ligase *(SINA)	0.03	Orthogroups_2024-Update
Solyc10g009420	No alias	E3 ubiquitin-protein ligase (AHRD V3.3 *** K4CYB8_SOLLC)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	InterProScan predictions
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR018121	7-in-absentia-prot_TRAF-dom	99	298

External Links

No external refs found!

Sopen02g019030

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation