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  5. Sopen02g019260

Sopen02g019260


Description : DEAD/DEAH box helicase


Gene families : OG_42_0006951 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006951_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g019260
Cluster HCCA clusters: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
At4g34910 No alias DEAD-box ATP-dependent RNA helicase 16... 0.04 Orthogroups_2024-Update
Bradi1g09970 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Orthogroups_2024-Update
Potri.007G021800 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
Pp1s54_78V6 No alias dead (asp-glu-ala-asp) box polypeptide 56 0.03 Orthogroups_2024-Update
Seita.9G108300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G155700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc02g070100 No alias RNA helicase DEAD7 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 39 216
IPR001650 Helicase_C 255 398
No external refs found!