Sopen02g020340

Description : RimM N-terminal domain

Gene families : OG_42_0007688 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007688_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen02g020340
Cluster	HCCA clusters: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
A4A49_20601	No alias	hypothetical protein	0.05	Orthogroups_2024-Update
Bradi2g16350	No alias	16S rRNA processing protein RimM family	0.03	Orthogroups_2024-Update
Mp1g13080.1	No alias	UDP-N-acetylglucosamine pyrophosphorylase	0.01	Orthogroups_2024-Update
Sobic.009G234200.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Solyc02g071280	No alias	16S rRNA processing protein RimM family (AHRD V3.3 ***...	0.12	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	InterProScan predictions
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002676	RimM_N	79	166
IPR027275	PRC-brl_dom	173	261

External Links

No external refs found!