Sopen02g020400

Description : ABC transporter transmembrane region

Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen02g020400
Cluster	HCCA clusters: Cluster_211

Target	Alias	Description	ECC score	Gene Family Method
230688	No alias	ATP binding cassette subfamily B19	0.03	Orthogroups_2024-Update
99885	No alias	ABC transporter family protein	0.02	Orthogroups_2024-Update
A4A49_30488	No alias	abc transporter b family member 21	0.03	Orthogroups_2024-Update
PSME_00016535-RA	No alias	(at3g28860 : 1775.0) Belongs to the family of...	0.02	Orthogroups_2024-Update
PSME_00023263-RA	No alias	(q6yuu5\|mdr_orysa : 1044.0) Putative multidrug...	0.02	Orthogroups_2024-Update
PSME_00023264-RA	No alias	(q6yuu5\|mdr_orysa : 1318.0) Putative multidrug...	0.03	Orthogroups_2024-Update
PSME_00026486-RA	No alias	(at1g02520 : 1594.0) P-glycoprotein 11 (PGP11);...	0.02	Orthogroups_2024-Update
PSME_00039058-RA	No alias	(q6yuu5\|mdr_orysa : 1225.0) Putative multidrug...	0.02	Orthogroups_2024-Update
Potri.001G165000	No alias	ATP binding cassette subfamily B19	0.02	Orthogroups_2024-Update
Seita.1G191000.1	No alias	subfamily ABCB transporter	0.05	Orthogroups_2024-Update
Seita.7G258700.1	No alias	auxin efflux transporter *(ABCB19) & subfamily ABCB transporter	0.02	Orthogroups_2024-Update
Solyc07g064120	No alias	ABC transporter B family protein (AHRD V3.3 *** G7JF16_MEDTR)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043492	ATPase activity, coupled to movement of substances	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	377	524
IPR011527	ABC1_TM_dom	35	307
IPR011527	ABC1_TM_dom	699	969
IPR003439	ABC_transporter-like	1039	1188

External Links

No external refs found!

Sopen02g020400

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation