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  5. Sopen02g020410

Sopen02g020410


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g020410
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
HORVU5Hr1G106200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Kfl01382_0010 kfl01382_0010_v1.1 no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
Solyc02g005160 No alias No description available 0.03 Orthogroups_2024-Update
Solyc03g043680 No alias No description available 0.03 Orthogroups_2024-Update
Solyc04g011970 No alias No description available 0.03 Orthogroups_2024-Update
Solyc05g050260 No alias No description available 0.04 Orthogroups_2024-Update
Solyc09g015410 No alias No description available 0.03 Orthogroups_2024-Update
Solyc09g059360 No alias No description available 0.02 Orthogroups_2024-Update
Sopen01g006590 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g016340 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen02g015660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen03g011280 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen05g019250 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g024980 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen06g011320 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen06g019130 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen06g024630 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g008090 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen10g023500 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g014180 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
evm.model.contig_3460.4 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_3644.2 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_3718.1 No alias (p10978|polx_tobac : 570.0) Retrovirus-related Pol... 0.01 Orthogroups_2024-Update
evm.model.contig_4508.4 No alias (p10978|polx_tobac : 387.0) Retrovirus-related Pol... 0.01 Orthogroups_2024-Update
evm.model.contig_4533.1 No alias (p10978|polx_tobac : 122.0) Retrovirus-related Pol... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR026992 DIOX_N 1296 1365
IPR013103 RVT_2 815 1058
IPR025724 GAG-pre-integrase_dom 385 454
IPR001584 Integrase_cat-core 471 583
IPR005123 Oxoglu/Fe-dep_dioxygenase 1421 1518
No external refs found!