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  5. Sopen02g020990

Sopen02g020990


Description : PPR repeat family


Gene families : OG_42_0012247 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0012247_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g020990
Cluster HCCA clusters: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
MA_44339g0010 No alias (at2g13600 : 431.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Solyc02g072020 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 315 335
IPR002885 Pentatricopeptide_repeat 150 172
IPR002885 Pentatricopeptide_repeat 414 439
IPR002885 Pentatricopeptide_repeat 181 209
IPR002885 Pentatricopeptide_repeat 485 510
IPR002885 Pentatricopeptide_repeat 340 387
IPR002885 Pentatricopeptide_repeat 239 287
No external refs found!