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  5. Sopen02g022550

Sopen02g022550


Description : PPR repeat family


Gene families : OG_42_0004106 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004106_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen02g022550
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Bradi2g46220 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G235200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.5G265700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc02g077650 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 224 273
IPR002885 Pentatricopeptide_repeat 153 203
IPR002885 Pentatricopeptide_repeat 93 116
IPR002885 Pentatricopeptide_repeat 377 402
IPR002885 Pentatricopeptide_repeat 411 439
IPR002885 Pentatricopeptide_repeat 293 323
IPR002885 Pentatricopeptide_repeat 325 357
No external refs found!